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Home : MGED Board : Board Meetings : Sixth Board Meeting
Tues 22/01/03 conference call MGED board meeting
Meeting minutes MGED notes 20030197
Present at meeting: Paul Spellman (acting secretary) Alvis Brazma Helen Causton Pascal Hingamp Gavin Sherlock (leaves at 9:00am) Chris Stoeckert Helen Parkinson Barbara Jasny John Quackenbush (8:17am) Jason Goncalves (8:30am)
Guests: Steve Chervitz Michael Miller
Paul went over resolutions from attorneys:
Authorization to open bank accounts APPROVED BY ALL BOARD MEMBERS Authorization to authorize refiling articles of incorporation APPROVED BY ALL BOARD MEMBERS Skip amended bylaws
Finances: Iobion has pledged money. Sun has supported jamboree $2K and written check to Stanford for $3K. Check will be returned and later reissued to MGEDS.
Start round of calls to donors. Gavin and Helen C will help out.
At 8:17a.m. Joined John Quackenbush
Alvis will put up Sun's logo on the mged site. Iobion logo presently up.
Alvis wants to talk about schedule for Denver meeting.
1) Big picture goals of MGED 2) How to help and what to expect in terms of annotations. Michael thinks people generally agree on the outline of what annotations should look like. JQ suggests examples from Rosetta. 3) Major projects and Funding Ontology for human and mouse anatomy (cross-mapping) Standards for proteomics Biomaterial preparations MAGE2 Protocols for microarrays (design, manufacture, and hybridization w/ NIST) Other efforts? Human Expression encyclopedia 4) Future board construction Jason Goncalves joins at 8:30
Pascal -- Discussion of MGED 6
1) Posters? Gavin and others, about 50. 2) Filming presentations? no one will watch. 3) Tutorials - require laptops? Gavin most will have laptops. Get apple, compaq, sun, ibm to loan machines? gavin -- sun and apple paul -- ibm pascal -- compaq 4) Schedule Early first day, late third day. 3/2 days tutorials and WGs 3/2 days sessions 3 hour working groups Paul too short for MAGE Michael -- a jamboree? 4 hours for ontologies Barbara -- Record tutorials? Record audio only? Jamboree at the end? attendance? length? Gavin will chair program committee
Budget Paul -- Shoot for no more than two sponsors to underwrite the meeting
Registration Pascal post on site february Paul seems rather early, how about May? Pascal open registration early April Alvis (and others) post meeting and speakers ASAP Industry and late fees extra
Speakers Alvis Proteomics Julio Merales? Suggestions to Gavin MIAME Support
MIAME Compliant software
Jason Goncalves System to certify software Two steps first step human curator to verify a named location in the software for all MIAME fields second does it make valid MAGE-ML Suggest we use the EBI annotators Alvis -- People can be paid at EBI, even as a consultant EMBL has commercial arm so this is not a problem Each submission will be billed a certain number of hours and then will be billed an hourly rate. Jason will initially develop plan worried about conflict. Paul -- Get Iobion, Rosetta, Affymetrix to develop guidelines. Jason -- we will give a draft process to Alvis and Helen. Paul -- other companies too? Michael Miller -- Charles Troup too. JQ -- TIGR is interested (Joe White) Jason -- I'll get us together and we'll report back at Denver.
Chris Stoeckert Ontology Jamboree make core ontology flow with MAGE model (rename and restructure). first pass posted (as of December) second OJ (six, Stoeckert, Parkinson, Ball, Spellman, White, and Whetzel). goal final core ontology by MGED6 Paul -- current versions always posted
Paul Spellman MAGE Jamboree Much documenting of the model Michael -- commercial folks Java code near Perl code in development RFP for Query service submitted RFI for MAGE2 not submitted RFP for MAGE2 in progress Documenting of model should be ok for v1.1 Alvis will there be a revision to MAGE1 Michael -- maybe Steve is documentation checked into sourceforge Michael, no posted to list, just a MS word document Steve will post if sent to me
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